Detailed information of SNP:
|
SNP ID:
sf0334746369(Gbrowse)
Chromosome: chr03 Position: 34746369 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 93.32% | 6.68% |
| All Indica | 788 | 89.85% | 10.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 368 | 79.08% | 20.92% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334746369 | G->A | LOC_Os03g61190(LOC_Os03g61190.1) | SNPs that introduce stop codons |