Detailed information of SNP:



SNP ID: sf0334772376(Gbrowse)

Chromosome: chr03

Position: 34772376
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1409 58.62% 41.38%
All Indica793 98.61% 1.39%
All Japonica497 0.40% 99.60%
Aus67 26.87% 73.13%
Indica I375 100.00% 0.00%
Indica II208 99.04% 0.96%
Indica Intermediate210 95.71% 4.29%
Temperate Japonica335 0.00% 100.00%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate38 63.16% 36.84%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0334772376 C->T LOC_Os03g61240(LOC_Os03g61240.1) UTR_3_PRIME