Detailed information of SNP:
|
SNP ID:
sf0334772376(Gbrowse)
Chromosome: chr03 Position: 34772376 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 58.62% | 41.38% |
| All Indica | 793 | 98.61% | 1.39% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 99.04% | 0.96% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334772376 | C->T | LOC_Os03g61240(LOC_Os03g61240.1) | UTR_3_PRIME |