Detailed information of SNP:
SNP ID:
sf0334802754(Gbrowse)
Chromosome: chr03 Position: 34802754 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1414 | 95.69% | 4.31% |
All Indica | 795 | 92.45% | 7.55% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 98.40% | 1.60% |
Indica II | 212 | 92.45% | 7.55% |
Indica Intermediate | 209 | 81.82% | 18.18% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0334802754 | C->T | INTERGENIC | None |