Detailed information of SNP:
|
SNP ID:
sf0334817638(Gbrowse)
Chromosome: chr03 Position: 34817638 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 93.08% | 6.92% |
| All Indica | 796 | 88.69% | 11.31% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334817638 | C->T | INTERGENIC | None |