Detailed information of SNP:
|
SNP ID:
sf0334834493(Gbrowse)
Chromosome: chr03 Position: 34834493 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1344 | 91.37% | 8.63% |
| All Indica | 725 | 85.38% | 14.62% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 340 | 83.24% | 16.76% |
| Indica II | 192 | 88.02% | 11.98% |
| Indica Intermediate | 193 | 86.53% | 13.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334834493 | A->G | LOC_Os03g61390(LOC_Os03g61390.1) | Synonymous |