Detailed information of SNP:
|
SNP ID:
sf0334842455(Gbrowse)
Chromosome: chr03 Position: 34842455 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 55.13% | 44.87% |
| All Indica | 794 | 87.91% | 12.09% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334842455 | T->C | LOC_Os03g61400(LOC_Os03g61400.1) | Non-Synonymous SNP |