Detailed information of SNP:
|
SNP ID:
sf0334843798(Gbrowse)
Chromosome: chr03 Position: 34843798 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.96% | 47.04% |
| All Indica | 798 | 89.35% | 10.65% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334843798 | C->T | INTERGENIC | None |