Detailed information of SNP:
|
SNP ID:
sf0334846889(Gbrowse)
Chromosome: chr03 Position: 34846889 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.74% | 43.26% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334846889 | T->C | LOC_Os03g61419(LOC_Os03g61419.1) | Synonymous |