Detailed information of SNP:
|
SNP ID:
sf0334852501(Gbrowse)
Chromosome: chr03 Position: 34852501 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.52% | 48.48% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334852501 | A->G | INTERGENIC | None |