Detailed information of SNP:
|
SNP ID:
sf0334886542(Gbrowse)
Chromosome: chr03 Position: 34886542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 94.75% | 5.25% |
| All Indica | 724 | 91.16% | 8.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 94.83% | 5.17% |
| Indica I | 334 | 91.62% | 8.38% |
| Indica II | 201 | 92.04% | 7.96% |
| Indica Intermediate | 189 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334886542 | C->T | INTERGENIC | None |