Detailed information of SNP:
|
SNP ID:
sf0334909139(Gbrowse)
Chromosome: chr03 Position: 34909139 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 91.87% | 8.13% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 57 | 38.60% | 61.40% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334909139 | T->C | INTERGENIC | None |