Detailed information of SNP:
|
SNP ID:
sf0334962884(Gbrowse)
Chromosome: chr03 Position: 34962884 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 91.61% | 8.39% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334962884 | T->C | LOC_Os03g61700(LOC_Os03g61700.1) | INTRON |