Detailed information of SNP:
|
SNP ID:
sf0334976172(Gbrowse)
Chromosome: chr03 Position: 34976172 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 93.01% | 6.99% |
| All Indica | 796 | 89.95% | 10.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334976172 | T->C | INTERGENIC | None |