Detailed information of SNP:
|
SNP ID:
sf0334979106(Gbrowse)
Chromosome: chr03 Position: 34979106 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.45% | 6.55% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334979106 | G->A | LOC_Os03g61720(LOC_Os03g61720.1) | INTRON |