Detailed information of SNP:
|
SNP ID:
sf0335011040(Gbrowse)
Chromosome: chr03 Position: 35011040 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 92.11% | 7.89% |
| All Indica | 786 | 99.75% | 0.25% |
| All Japonica | 411 | 75.67% | 24.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 208 | 99.04% | 0.96% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 268 | 69.40% | 30.60% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 58 | 81.03% | 18.97% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335011040 | T->C | INTERGENIC | None |