Detailed information of SNP:
|
SNP ID:
sf0335020536(Gbrowse)
Chromosome: chr03 Position: 35020536 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 92.16% | 7.84% |
| All Indica | 795 | 95.60% | 4.40% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335020536 | G->A | LOC_Os03g61780(LOC_Os03g61780.1) | INTRON |
| sf0335020536 | G->A | LOC_Os03g61780(LOC_Os03g61780.2) | INTRON |