Detailed information of SNP:
|
SNP ID:
sf0335052638(Gbrowse)
Chromosome: chr03 Position: 35052638 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 90.41% | 9.59% |
| All Indica | 788 | 89.34% | 10.66% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 370 | 90.81% | 9.19% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335052638 | C->T | INTERGENIC | None |