Detailed information of SNP:
|
SNP ID:
sf0335104432(Gbrowse)
Chromosome: chr03 Position: 35104432 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 95.91% | 4.09% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335104432 | A->G | LOC_Os03g61930(LOC_Os03g61930.2) | INTRON |
| sf0335104432 | A->G | LOC_Os03g61930(LOC_Os03g61930.1) | INTRON |
| sf0335104432 | A->G | LOC_Os03g61930(LOC_Os03g61930.4) | INTRON |