Detailed information of SNP:
|
SNP ID:
sf0335107892(Gbrowse)
Chromosome: chr03 Position: 35107892 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1278 | 94.99% | 5.01% |
| All Indica | 731 | 99.86% | 0.14% |
| All Japonica | 431 | 85.38% | 14.62% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 344 | 100.00% | 0.00% |
| Indica II | 190 | 99.47% | 0.53% |
| Indica Intermediate | 197 | 100.00% | 0.00% |
| Temperate Japonica | 293 | 81.23% | 18.77% |
| Tropical Japonica | 84 | 97.62% | 2.38% |
| Japonica Intermediate | 54 | 88.89% | 11.11% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335107892 | A->G | INTERGENIC | None |