Detailed information of SNP:
|
SNP ID:
sf0335132811(Gbrowse)
Chromosome: chr03 Position: 35132811 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1223 | 92.72% | 7.28% |
| All Indica | 741 | 99.73% | 0.27% |
| All Japonica | 369 | 76.42% | 23.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 335 | 100.00% | 0.00% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 232 | 68.53% | 31.47% |
| Tropical Japonica | 81 | 96.30% | 3.70% |
| Japonica Intermediate | 56 | 80.36% | 19.64% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 34 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335132811 | T->C | INTERGENIC | None |