Detailed information of SNP:
|
SNP ID:
sf0335134856(Gbrowse)
Chromosome: chr03 Position: 35134856 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.11% | 21.89% |
| All Indica | 799 | 64.33% | 35.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335134856 | T->A | INTERGENIC | None |