Detailed information of SNP:
|
SNP ID:
sf0335134880(Gbrowse)
Chromosome: chr03 Position: 35134880 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 78.05% | 21.95% |
| All Indica | 798 | 64.29% | 35.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 212 | 46.70% | 53.30% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335134880 | T->G | INTERGENIC | None |