Detailed information of SNP:
|
SNP ID:
sf0335136804(Gbrowse)
Chromosome: chr03 Position: 35136804 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 96.45% | 3.55% |
| All Indica | 793 | 95.21% | 4.79% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335136804 | T->G | INTERGENIC | None |