Detailed information of SNP:
|
SNP ID:
sf0335138241(Gbrowse)
Chromosome: chr03 Position: 35138241 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 87.92% | 12.08% |
| All Indica | 739 | 78.62% | 21.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 88.92% | 11.08% |
| Indica II | 189 | 70.37% | 29.63% |
| Indica Intermediate | 189 | 67.20% | 32.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335138241 | G->C | INTERGENIC | None |