Detailed information of SNP:
|
SNP ID:
sf0335179479(Gbrowse)
Chromosome: chr03 Position: 35179479 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 53.73% | 46.27% |
| All Indica | 780 | 47.56% | 52.44% |
| All Japonica | 454 | 55.07% | 44.93% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 26.10% | 73.90% |
| Indica II | 209 | 70.33% | 29.67% |
| Indica Intermediate | 207 | 62.32% | 37.68% |
| Temperate Japonica | 300 | 68.00% | 32.00% |
| Tropical Japonica | 90 | 25.56% | 74.44% |
| Japonica Intermediate | 64 | 35.94% | 64.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335179479 | G->T | INTERGENIC | None |