Detailed information of SNP:
|
SNP ID:
sf0335203159(Gbrowse)
Chromosome: chr03 Position: 35203159 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 94.62% | 5.38% |
| All Indica | 776 | 99.61% | 0.39% |
| All Japonica | 445 | 84.49% | 15.51% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 354 | 99.72% | 0.28% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 297 | 77.44% | 22.56% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335203159 | A->T | LOC_Os03g62160(LOC_Os03g62160.1) | INTRON |
| sf0335203159 | A->T | LOC_Os03g62160(LOC_Os03g62160.2) | INTRON |