Detailed information of SNP:
|
SNP ID:
sf0335239000(Gbrowse)
Chromosome: chr03 Position: 35239000 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 73.02% | 26.98% |
| All Indica | 796 | 57.79% | 42.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 373 | 78.02% | 21.98% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335239000 | A->G | INTERGENIC | None |