Detailed information of SNP:
|
SNP ID:
sf0335260777(Gbrowse)
Chromosome: chr03 Position: 35260777 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 82.73% | 17.27% |
| All Indica | 764 | 69.63% | 30.37% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 85.25% | 14.75% |
| Indica II | 203 | 58.13% | 41.87% |
| Indica Intermediate | 195 | 52.31% | 47.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335260777 | G->T | LOC_Os03g62270(LOC_Os03g62270.1) | INTRON |