Detailed information of SNP:
|
SNP ID:
sf0335265480(Gbrowse)
Chromosome: chr03 Position: 35265480 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 59.70% | 40.30% |
| All Indica | 789 | 32.32% | 67.68% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 50 | 94.00% | 6.00% |
| Indica I | 369 | 43.90% | 56.10% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 207 | 26.09% | 73.91% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335265480 | T->A | INTERGENIC | None |