Detailed information of SNP:
|
SNP ID:
sf0335274530(Gbrowse)
Chromosome: chr03 Position: 35274530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.73% | 6.27% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335274530 | C->T | INTERGENIC | None |