Detailed information of SNP:
|
SNP ID:
sf0335281980(Gbrowse)
Chromosome: chr03 Position: 35281980 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 50.67% | 49.33% |
| All Indica | 799 | 23.03% | 76.97% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335281980 | A->G | LOC_Os03g62290(LOC_Os03g62290.1) | Non-Synonymous SNP |