Detailed information of SNP:
|
SNP ID:
sf0335282010(Gbrowse)
Chromosome: chr03 Position: 35282010 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 97.15% | 2.85% |
| All Indica | 791 | 100.00% | 0.00% |
| All Japonica | 461 | 91.76% | 8.24% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 97.76% | 2.24% |
| Tropical Japonica | 89 | 77.53% | 22.47% |
| Japonica Intermediate | 60 | 81.67% | 18.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335282010 | G->A | LOC_Os03g62290(LOC_Os03g62290.1) | Non-Synonymous SNP |