Detailed information of SNP:
|
SNP ID:
sf0335290383(Gbrowse)
Chromosome: chr03 Position: 35290383 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1186 | 96.04% | 3.96% |
| All Indica | 669 | 99.85% | 0.15% |
| All Japonica | 406 | 88.67% | 11.33% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 276 | 100.00% | 0.00% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 192 | 99.48% | 0.52% |
| Temperate Japonica | 308 | 96.43% | 3.57% |
| Tropical Japonica | 54 | 68.52% | 31.48% |
| Japonica Intermediate | 44 | 59.09% | 40.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335290383 | C->A | LOC_Os03g62300(LOC_Os03g62300.1) | INTRON |