Detailed information of SNP:
|
SNP ID:
sf0335302446(Gbrowse)
Chromosome: chr03 Position: 35302446 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 86.18% | 13.82% |
| All Indica | 756 | 75.79% | 24.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 90.33% | 9.67% |
| Indica II | 199 | 59.30% | 40.70% |
| Indica Intermediate | 195 | 65.64% | 34.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335302446 | C->T | INTERGENIC | None |