Detailed information of SNP:
|
SNP ID:
sf0335347449(Gbrowse)
Chromosome: chr03 Position: 35347449 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 74.14% | 25.86% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 35.41% | 64.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335347449 | G->C | LOC_Os03g62410(LOC_Os03g62410.2) | UTR_5_PRIME |
| sf0335347449 | G->C | LOC_Os03g62410(LOC_Os03g62410.1) | Non-Synonymous SNP |