Detailed information of SNP:
|
SNP ID:
sf0335404536(Gbrowse)
Chromosome: chr03 Position: 35404536 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 91.75% | 8.25% |
| All Indica | 730 | 90.96% | 9.04% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 355 | 97.18% | 2.82% |
| Indica II | 184 | 77.72% | 22.28% |
| Indica Intermediate | 191 | 92.15% | 7.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335404536 | A->C | LOC_Os03g62539(LOC_Os03g62539.1) | INTRON |