Detailed information of SNP:
|
SNP ID:
sf0335420641(Gbrowse)
Chromosome: chr03 Position: 35420641 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 74.82% | 25.18% |
| All Indica | 798 | 62.16% | 37.84% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 75.67% | 24.33% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335420641 | C->G | LOC_Os03g62580(LOC_Os03g62580.1) | UTR_3_PRIME |
| sf0335420641 | C->G | LOC_Os03g62580(LOC_Os03g62580.7) | UTR_3_PRIME |
| sf0335420641 | C->G | LOC_Os03g62580(LOC_Os03g62580.2) | INTRON |
| sf0335420641 | C->G | LOC_Os03g62580(LOC_Os03g62580.5) | INTRON |
| sf0335420641 | C->G | LOC_Os03g62580(LOC_Os03g62580.6) | INTRON |
| sf0335420641 | C->G | LOC_Os03g62580(LOC_Os03g62580.3) | INTRON |
| sf0335420641 | C->G | LOC_Os03g62580(LOC_Os03g62580.4) | UTR_3_PRIME |