Detailed information of SNP:
|
SNP ID:
sf0335427520(Gbrowse)
Chromosome: chr03 Position: 35427520 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.90% | 11.10% |
| All Indica | 797 | 86.07% | 13.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 43.75% | 56.25% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335427520 | C->A | INTERGENIC | None |