Detailed information of SNP:
|
SNP ID:
sf0335439957(Gbrowse)
Chromosome: chr03 Position: 35439957 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 94.01% | 5.99% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335439957 | T->C | LOC_Os03g62640(LOC_Os03g62640.5) | UTR_3_PRIME |
| sf0335439957 | T->C | LOC_Os03g62640(LOC_Os03g62640.4) | UTR_3_PRIME |
| sf0335439957 | T->C | LOC_Os03g62640(LOC_Os03g62640.3) | UTR_3_PRIME |
| sf0335439957 | T->C | LOC_Os03g62640(LOC_Os03g62640.2) | Non-Synonymous SNP |