Detailed information of SNP:
|
SNP ID:
sf0335442586(Gbrowse)
Chromosome: chr03 Position: 35442586 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 80.76% | 19.24% |
| All Indica | 799 | 71.84% | 28.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335442586 | G->A | LOC_Os03g62640(LOC_Os03g62640.5) | INTRON |
| sf0335442586 | G->A | LOC_Os03g62640(LOC_Os03g62640.4) | INTRON |
| sf0335442586 | G->A | LOC_Os03g62640(LOC_Os03g62640.3) | INTRON |
| sf0335442586 | G->A | LOC_Os03g62640(LOC_Os03g62640.2) | INTRON |