Detailed information of SNP:
|
SNP ID:
sf0335509876(Gbrowse)
Chromosome: chr03 Position: 35509876 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.36% | 27.64% |
| All Indica | 798 | 89.35% | 10.65% |
| All Japonica | 497 | 39.64% | 60.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 19.70% | 80.30% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335509876 | A->G | LOC_Os03g62750(LOC_Os03g62750.4) | UTR_3_PRIME |
| sf0335509876 | A->G | LOC_Os03g62750(LOC_Os03g62750.2) | UTR_3_PRIME |
| sf0335509876 | A->G | LOC_Os03g62750(LOC_Os03g62750.3) | UTR_3_PRIME |
| sf0335509876 | A->G | LOC_Os03g62750(LOC_Os03g62750.1) | UTR_3_PRIME |
| sf0335509876 | A->G | LOC_Os03g62760(LOC_Os03g62760.1) | UTR_3_PRIME |