Detailed information of SNP:



SNP ID: sf0335533011(Gbrowse)

Chromosome: chr03

Position: 35533011
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 95.77% 4.23%
All Indica797 92.72% 7.28%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I374 98.93% 1.07%
Indica II212 81.60% 18.40%
Indica Intermediate211 92.89% 7.11%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0335533011 C->T LOC_Os03g62820(LOC_Os03g62820.1) SNPs that introduce stop codons