Detailed information of SNP:
|
SNP ID:
sf0335536477(Gbrowse)
Chromosome: chr03 Position: 35536477 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 68.18% | 31.82% |
| All Indica | 793 | 69.23% | 30.77% |
| All Japonica | 496 | 63.91% | 36.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 69.71% | 30.29% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335536477 | C->T | INTERGENIC | None |