Detailed information of SNP:
|
SNP ID:
sf0335552202(Gbrowse)
Chromosome: chr03 Position: 35552202 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 98.64% | 1.36% |
| All Indica | 786 | 100.00% | 0.00% |
| All Japonica | 485 | 96.08% | 3.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 78.16% | 21.84% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335552202 | A->G | LOC_Os03g62860(LOC_Os03g62860.1) | INTRON |