Detailed information of SNP:
|
SNP ID:
sf0335565122(Gbrowse)
Chromosome: chr03 Position: 35565122 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.30% | 34.70% |
| All Indica | 799 | 68.09% | 31.91% |
| All Japonica | 496 | 58.06% | 41.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 68.80% | 31.20% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335565122 | C->T | LOC_Os03g62880(LOC_Os03g62880.1) | INTRON |