Detailed information of SNP:
|
SNP ID:
sf0335575993(Gbrowse)
Chromosome: chr03 Position: 35575993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 90.85% | 9.15% |
| All Indica | 766 | 88.51% | 11.49% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 358 | 96.37% | 3.63% |
| Indica II | 203 | 69.46% | 30.54% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335575993 | C->T | INTERGENIC | None |