Detailed information of SNP:
|
SNP ID:
sf0335602413(Gbrowse)
Chromosome: chr03 Position: 35602413 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 70.08% | 29.92% |
| All Indica | 797 | 60.35% | 39.65% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 59.79% | 40.21% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335602413 | T->C | INTERGENIC | None |