Detailed information of SNP:
|
SNP ID:
sf0335606209(Gbrowse)
Chromosome: chr03 Position: 35606209 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.82% | 8.18% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335606209 | C->T | INTERGENIC | None |