Detailed information of SNP:
|
SNP ID:
sf0335626500(Gbrowse)
Chromosome: chr03 Position: 35626500 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.11% | 41.89% |
| All Indica | 798 | 65.04% | 34.96% |
| All Japonica | 497 | 37.63% | 62.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 52.86% | 47.14% |
| Temperate Japonica | 335 | 16.42% | 83.58% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335626500 | T->G | LOC_Os03g63020(LOC_Os03g63020.1) | UTR_5_PRIME |
| sf0335626500 | T->G | LOC_Os03g63020(LOC_Os03g63020.2) | UTR_5_PRIME |