Detailed information of SNP:
|
SNP ID:
sf0335641716(Gbrowse)
Chromosome: chr03 Position: 35641716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.98% | 26.02% |
| All Indica | 799 | 59.70% | 40.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 46.13% | 53.87% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335641716 | G->A | LOC_Os03g63040(LOC_Os03g63040.1) | INTRON |